updated June, 2011

a complete list, including manuscripts in preparation: Ben's C.V.
Notch signaling is required for activity-dependent synaptic plasticity at the Drosophila neuromuscular junction.
de Bivort B, Guo HF, Zhong Y.
Journal of Neurogenetics. 23(4), 395-404, 2009. PDF



Attractors and democratic dynamics.
Bar-Yam Y, Harmon D, de Bivort B
Science. 323, 1016-1017, 2009. PDF



A systematic revision of South African Pettalidae (Arachnida : Opiliones : Cyphophthalmi) based on a combined analysis of discrete and continuous characters with the description of seven new species.
de Bivort B, Giribet G.
Invertebrate Systematics. 24(4), 371-406, 2010. request



Phylogenetic signals in morphometric data.
Clouse R, de Bivort B, Giribet G.
Cladistics. 27(4), 1-4, 2010. request



A morphometrics-based phylogeny of the temperate Gondwanan mite harvestmen (Opiliones, Cyphophthalmi, Pettalidae).
de Bivort B, Clouse R, Giribet G.
Journal of Zoological Systematics and Evolutionary Research. 48(4), 294-309, 2010. request



A phylogenetic analysis for the South-east Asian mite harvestman family Stylocellidae (Opiliones : Cyphophthalmi) - a combined analysis using morphometric and molecular data.
Clouse R, de Bivort B, Giribet G.
Invertebrate Systematics. 23(6), 515-29, 2009. PDF



Amino Acid Metabolic Origin as an Evolutionary Influence on Protein Sequence in Yeast.
de Bivort B & Perlstein E, Kunes S, Schreiber S.
Journal of Molecular Evolution. 68(5), 490-497, 2009. PDF



Polar localization and compartmentalization of ClpP proteases during growth and sporulation in Bacillus subtilis.
Kain J, He GG, Losick R.
Journal of Bacteriology. 190(20), 6749-6757, 2008.



Empirical multiscale networks of cellular regulation.
de Bivort B, Huang S, Bar-Yam Y.
Public Library of Science: Computational Biology. 3(10), 1968-1978, 2007. PDF



Evolutionarily conserved optimization of amino acid biosynthesis.
de Bivort B and Perlstein E, Kunes S, Schreiber S.
Journal of Molecular Evolution. 65(2), 186-196, 2007. PDF



Metabolic implications for the mechanism of mitochondrial endosymbiosis and human hereditary disorders.
de Bivort B, Chen C, Perretti F, Negro G, Philip T, Bar-Yam Y.
Journal of Theoretical Biology. 248(91), 26-36, 2007. PDF



Estimating kinetic parameters from HIV primary infection data through the eyes of three different mathematical models.
Ciupe S, de Bivort B, Nelson P.
Mathematical Biosciences. 200(1), 1-27, 2006. PDF



Dynamics of cellular level function and regulation derived from murine expression array data.
de Bivort B, Huang S, Bar-Yam Y.
PNAS.101(51), 17687-92, 2004. PDF
Commentary on this paper: Systems Biologists Push Technology to the Edge. Schaffer C. Genomics & Proteomics. April, 2005.



A new genus of cyphophthalmid from the Iberian Peninsula with a phylogenetic analysis of the Sironidae (Arachnida: Opiliones: Cyphophthalmi) and a SEM database of external morphology.
de Bivort B, Giribet G.
Invertebrate Systematics 18(1), 7-52, 2004. PDF